HL_7OYD_061
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_061 not in the Motif Atlas
- Homologous match to HL_8C3A_062
- Geometric discrepancy: 0.1852
- The information below is about HL_8C3A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|C|4421
7OYD|1|5|G|4422
7OYD|1|5|U|4423
7OYD|1|5|U|4424
7OYD|1|5|C|4425
7OYD|1|5|A|4426
7OYD|1|5|U|4427
7OYD|1|5|A|4428
7OYD|1|5|G|4429
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain m
- RPL40
- Chain v
- EEF2
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