HL_7OYD_062

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7OYD|1|5|G|4479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_062 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.0958

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7OYD|1|5|A|4478
7OYD|1|5|G|4479
7OYD|1|5|C|4480
7OYD|1|5|A|4481
7OYD|1|5|G|4482
7OYD|1|5|A|4483
7OYD|1|5|A|4484
7OYD|1|5|U|4485

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

RPL40

Chain v

EEF2