HL_7OYD_087

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG(PSU)(PSU)CAAAG

Length

9 nucleotides

Bulged bases

7OYD|1|9|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_087 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.4099

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7OYD|1|9|U|820
7OYD|1|9|G|821
7OYD|1|9|PSU|822
7OYD|1|9|PSU|823
7OYD|1|9|C|824
7OYD|1|9|A|825
7OYD|1|9|A|826
7OYD|1|9|A|827
7OYD|1|9|G|828

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

40S ribosomal protein S24