HL_7OYD_097

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7OYD|1|9|U|1300, 7OYD|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_097 not in the Motif Atlas

Geometric match to HL_4V88_213

Geometric discrepancy: 0.3635

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OYD|1|9|A|1295
7OYD|1|9|U|1296
7OYD|1|9|U|1297
7OYD|1|9|G|1298
7OYD|1|9|A|1299
7OYD|1|9|U|1300
7OYD|1|9|A|1301
7OYD|1|9|G|1302
7OYD|1|9|C|1303
7OYD|1|9|U|1304

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Dd

uS14

Chain PP

40S ribosomal protein uS19