HL_7PIR_093

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7PIR|1|5|G|1085

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_093 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.3352

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7PIR|1|5|G|1080
7PIR|1|5|U|1081
7PIR|1|5|U|1082
7PIR|1|5|A|1083
7PIR|1|5|A|1084
7PIR|1|5|G|1085
7PIR|1|5|U|1086
7PIR|1|5|C|1087

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain A

30S ribosomal protein S2