HL_7PWO_022

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUGGCCUG

Length

8 nucleotides

Bulged bases

7PWO|1|1|C|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_022 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.2176

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7PWO|1|1|C|787
7PWO|1|1|U|788
7PWO|1|1|G|789
7PWO|1|1|G|790
7PWO|1|1|C|791
7PWO|1|1|C|792
7PWO|1|1|U|793
7PWO|1|1|G|794

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain D2

Ribosomal protein L5

Chain T2

Ribosomal protein L21

Chain b2

60S ribosomal protein L29