HL_7PWO_036

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCACAG

Length

7 nucleotides

Bulged bases

7PWO|1|1|C|1477, 7PWO|1|1|A|1481

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_036 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1083

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7PWO|1|1|C|1475
7PWO|1|1|G|1476
7PWO|1|1|C|1477
7PWO|1|1|A|1478
7PWO|1|1|C|1480
7PWO|1|1|A|1481
7PWO|1|1|G|1482

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain P2

Ribosomal protein L17

Chain j2

Ribosomal protein L37

Chain l2

Ribosomal protein L39