HL_7PWO_045

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGCAAUUUC

Length

9 nucleotides

Bulged bases

7PWO|1|1|U|1785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_045 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1721

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7PWO|1|1|G|1779
7PWO|1|1|G|1780
7PWO|1|1|C|1781
7PWO|1|1|A|1782
7PWO|1|1|A|1783
7PWO|1|1|U|1784
7PWO|1|1|U|1785
7PWO|1|1|U|1786
7PWO|1|1|C|1787

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain V2

Ribosomal protein L23