HL_7PWO_069

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGUCGCGGC

Length

9 nucleotides

Bulged bases

7PWO|1|2|G|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_069 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1379

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7PWO|1|2|G|242
7PWO|1|2|G|243
7PWO|1|2|U|244
7PWO|1|2|C|245
7PWO|1|2|G|246
7PWO|1|2|C|247
7PWO|1|2|G|248
7PWO|1|2|G|249
7PWO|1|2|C|250

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain I1

40S ribosomal protein S8

Chain L1

SSU ribosomal protein S17P