HL_7PWO_086

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUCCAUUG

Length

8 nucleotides

Bulged bases

7PWO|1|2|U|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_086 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2066

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7PWO|1|2|C|1049
7PWO|1|2|U|1050
7PWO|1|2|C|1051
7PWO|1|2|C|1052
7PWO|1|2|A|1053
7PWO|1|2|U|1054
7PWO|1|2|U|1055
7PWO|1|2|G|1056

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain R1

Ribosomal protein S17