HL_7Q08_016

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GUGUAAAAC

Length

9 nucleotides

Bulged bases

7Q08|1|1|U|687, 7Q08|1|1|A|689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_016 not in the Motif Atlas

Homologous match to HL_8C3A_015

Geometric discrepancy: 0.076

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7Q08|1|1|G|684
7Q08|1|1|U|685
7Q08|1|1|G|686
7Q08|1|1|U|687
7Q08|1|1|A|688
7Q08|1|1|A|689
7Q08|1|1|A|690
7Q08|1|1|A|691
7Q08|1|1|C|692

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal 60S subunit protein L26B

Chain l

Ribosomal 60S subunit protein L4B

Chain t

60S ribosomal protein L13

Chain v

Ribosomal protein L15