HL_7Q08_047

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

7Q08|1|1|A|2116, 7Q08|1|1|A|2117, 7Q08|1|1|U|2118, 7Q08|1|1|A|2122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_047 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0778

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7Q08|1|1|U|2113
7Q08|1|1|C|2114
7Q08|1|1|U|2115
7Q08|1|1|A|2116
7Q08|1|1|A|2117
7Q08|1|1|U|2118
7Q08|1|1|U|2119
7Q08|1|1|A|2120
7Q08|1|1|A|2121
7Q08|1|1|A|2122
7Q08|1|1|A|2123

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AK

Ribosomal protein L37

Chain j

Ribosomal 60S subunit protein L2A