3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
GUAACUAUGAC
Length
11 nucleotides
Bulged bases
7Q08|1|1|A|2234
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7Q08_050 not in the Motif Atlas
Homologous match to HL_8C3A_049
Geometric discrepancy: 0.1292
The information below is about HL_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7Q08|1|1|G|2231
7Q08|1|1|U|2232
7Q08|1|1|A|2233
7Q08|1|1|A|2234
7Q08|1|1|C|2235
7Q08|1|1|U|2236
7Q08|1|1|A|2237
7Q08|1|1|U|2238
7Q08|1|1|G|2239
7Q08|1|1|A|2240
7Q08|1|1|C|2241

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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