HL_7Q08_064

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7Q08|1|1|G|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_064 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.0956

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7Q08|1|1|A|2869
7Q08|1|1|G|2870
7Q08|1|1|C|2871
7Q08|1|1|A|2872
7Q08|1|1|G|2873
7Q08|1|1|A|2874
7Q08|1|1|A|2875
7Q08|1|1|U|2876

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Rpl40bp

Chain q

Ribosomal 60S subunit protein L9B