HL_7Q08_083

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

7Q08|1|A|U|247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_083 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.108

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7Q08|1|A|G|241
7Q08|1|A|A|242
7Q08|1|A|U|243
7Q08|1|A|G|244
7Q08|1|A|A|245
7Q08|1|A|U|246
7Q08|1|A|U|247
7Q08|1|A|C|248

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

40S ribosomal protein S6

Chain M

Ribosomal 40S subunit protein S11A