HL_7Q08_085

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7Q08|1|A|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_085 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.1096

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7Q08|1|A|G|328
7Q08|1|A|A|329
7Q08|1|A|U|330
7Q08|1|A|A|331
7Q08|1|A|G|332
7Q08|1|A|U|333
7Q08|1|A|G|334
7Q08|1|A|G|335
7Q08|1|A|C|336

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain M

Ribosomal 40S subunit protein S11A