HL_7QCA_019

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUCUGCAAAU

Length

10 nucleotides

Bulged bases

7QCA|1|L50|U|630, 7QCA|1|L50|A|634, 7QCA|1|L50|A|635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_019 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1317

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|A|627
7QCA|1|L50|U|628
7QCA|1|L50|C|629
7QCA|1|L50|U|630
7QCA|1|L50|G|631
7QCA|1|L50|C|632
7QCA|1|L50|A|633
7QCA|1|L50|A|634
7QCA|1|L50|A|635
7QCA|1|L50|U|636

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LJJ

eL37 LJJ

Chain LP0

60S ribosomal protein L17