HL_7QCA_036

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGUAUCAG

Length

8 nucleotides

Bulged bases

7QCA|1|L50|U|1454, 7QCA|1|L50|U|1456, 7QCA|1|L50|A|1458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_036 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1534

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7QCA|1|L50|C|1452
7QCA|1|L50|G|1453
7QCA|1|L50|U|1454
7QCA|1|L50|A|1455
7QCA|1|L50|U|1456
7QCA|1|L50|C|1457
7QCA|1|L50|A|1458
7QCA|1|L50|G|1459

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LJJ

eL37 LJJ

Chain LLL

60S ribosomal protein L39

Chain LP0

60S ribosomal protein L17