HL_7QCA_041

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UUUAGUAAAAA

Length

11 nucleotides

Bulged bases

7QCA|1|L50|A|1590, 7QCA|1|L50|G|1591, 7QCA|1|L50|U|1592, 7QCA|1|L50|A|1596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_041 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1545

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7QCA|1|L50|U|1587
7QCA|1|L50|U|1588
7QCA|1|L50|U|1589
7QCA|1|L50|A|1590
7QCA|1|L50|G|1591
7QCA|1|L50|U|1592
7QCA|1|L50|A|1593
7QCA|1|L50|A|1594
7QCA|1|L50|A|1595
7QCA|1|L50|A|1596
7QCA|1|L50|A|1597

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LJJ

eL37 LJJ