HL_7QCA_050

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAGAAUCAGAACG

Length

13 nucleotides

Bulged bases

7QCA|1|L50|A|2007, 7QCA|1|L50|A|2008, 7QCA|1|L50|C|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_050 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.4796

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7QCA|1|L50|C|2004
7QCA|1|L50|A|2005
7QCA|1|L50|G|2006
7QCA|1|L50|A|2007
7QCA|1|L50|A|2008
7QCA|1|L50|U|2009
7QCA|1|L50|C|2010
7QCA|1|L50|A|2011
7QCA|1|L50|G|2012
7QCA|1|L50|A|2013
7QCA|1|L50|A|2014
7QCA|1|L50|C|2015
7QCA|1|L50|G|2016

Current chains

Chain L50

RNA 23S

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LI0

S60 ribosomal protein L10

Chain LT0

60s ribosomal protein L21