HL_7QCA_056

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGUAGAAAG

Length

9 nucleotides

Bulged bases

7QCA|1|L50|U|2210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_056 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.3131

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|C|2208
7QCA|1|L50|G|2209
7QCA|1|L50|U|2210
7QCA|1|L50|A|2211
7QCA|1|L50|G|2212
7QCA|1|L50|A|2213
7QCA|1|L50|A|2214
7QCA|1|L50|A|2215
7QCA|1|L50|G|2216

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LI0

S60 ribosomal protein L10

Chain LMM

Ubiquitin