HL_7QCA_064

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUUGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_064 not in the Motif Atlas

Geometric match to HL_1OOA_001

Geometric discrepancy: 0.37

The information below is about HL_1OOA_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7QCA|1|L50|A|2566
7QCA|1|L50|U|2567
7QCA|1|L50|U|2568
7QCA|1|L50|G|2572
7QCA|1|L50|U|2573

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LU0

60S ribosomal protein L22

Chain SI0

40S ribosomal protein S8