HL_7QGR_040

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGR_040 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.1337

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7QGR|1|N|U|158
7QGR|1|N|G|159
7QGR|1|N|A|160
7QGR|1|N|A|161
7QGR|1|N|U|162
7QGR|1|N|C|163
7QGR|1|N|C|164
7QGR|1|N|A|165
7QGR|1|N|U|166
7QGR|1|N|A|167
7QGR|1|N|G|168

Current chains

Chain N

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L28