HL_7QH7_008

3D structure

PDB id

7QH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGUAGCAAAA

Length

10 nucleotides

Bulged bases

7QH7|1|A|A|1957, 7QH7|1|A|A|1961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QH7_008 not in the Motif Atlas

Geometric match to HL_7RQB_023

Geometric discrepancy: 0.1488

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

7QH7|1|A|U|1954
7QH7|1|A|G|1955
7QH7|1|A|U|1956
7QH7|1|A|A|1957
7QH7|1|A|G|1958
7QH7|1|A|C|1959
7QH7|1|A|A|1960
7QH7|1|A|A|1961
7QH7|1|A|A|1962
7QH7|1|A|A|1963

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial