HL_7QIW_023

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7QIW|1|2|A|923, 7QIW|1|2|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_023 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.114

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QIW|1|2|G|920
7QIW|1|2|C|921
7QIW|1|2|G|922
7QIW|1|2|A|923
7QIW|1|2|A|924
7QIW|1|2|A|925
7QIW|1|2|G|926
7QIW|1|2|A|927
7QIW|1|2|C|928

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain P

Ribosomal protein L15

Chain l

Ribosomal protein L37