HL_7QIW_052

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUAAAAG(A2M)UAACG

Length

13 nucleotides

Bulged bases

7QIW|1|2|A|2641, 7QIW|1|2|C|2648

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_052 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1048

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7QIW|1|2|U|2637
7QIW|1|2|U|2638
7QIW|1|2|A|2639
7QIW|1|2|A|2640
7QIW|1|2|A|2641
7QIW|1|2|A|2642
7QIW|1|2|G|2643
7QIW|1|2|A2M|2644
7QIW|1|2|U|2645
7QIW|1|2|A|2646
7QIW|1|2|A|2647
7QIW|1|2|C|2648
7QIW|1|2|G|2649

Current chains

Chain 2

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L10

Chain V

60S ribosomal protein eL21

Chain d

60S ribosomal protein L29