HL_7QIW_058

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGU(PSU)CAUAG

Length

9 nucleotides

Bulged bases

7QIW|1|2|U|2846

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_058 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.3055

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QIW|1|2|C|2844
7QIW|1|2|G|2845
7QIW|1|2|U|2846
7QIW|1|2|PSU|2847
7QIW|1|2|C|2848
7QIW|1|2|A|2849
7QIW|1|2|U|2850
7QIW|1|2|A|2851
7QIW|1|2|G|2852

Current chains

Chain 2

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L10

Chain o

Ubiquitin-like domain-containing protein