HL_7QIW_059

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7QIW|1|2|G|2902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_059 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1292

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7QIW|1|2|A|2901
7QIW|1|2|G|2902
7QIW|1|2|C|2903
7QIW|1|2|A|2904
7QIW|1|2|G|2905
7QIW|1|2|A|2906
7QIW|1|2|A|2907
7QIW|1|2|U|2908

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain o

Ubiquitin-like domain-containing protein