HL_7QIW_073

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

(A2M)CGUGCAAA(PSU)

Length

10 nucleotides

Bulged bases

7QIW|1|2|U|889, 7QIW|1|2|A|893, 7QIW|1|2|A|894

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_073 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.2152

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7QIW|1|2|A2M|886
7QIW|1|2|C|887
7QIW|1|2|G|888
7QIW|1|2|U|889
7QIW|1|2|G|890
7QIW|1|2|C|891
7QIW|1|2|A|892
7QIW|1|2|A|893
7QIW|1|2|A|894
7QIW|1|2|PSU|895

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic

Chain l

Ribosomal protein L37