HL_7QIZ_017
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCGAGUAAAC
- Length
- 10 nucleotides
- Bulged bases
- 7QIZ|1|2|G|701, 7QIZ|1|2|A|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_017 not in the Motif Atlas
- Homologous match to HL_8C3A_015
- Geometric discrepancy: 0.4334
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7QIZ|1|2|G|697
7QIZ|1|2|C|698
7QIZ|1|2|G|699
7QIZ|1|2|A|700
7QIZ|1|2|G|701
7QIZ|1|2|U|702
7QIZ|1|2|A|703
7QIZ|1|2|A|704
7QIZ|1|2|A|705
7QIZ|1|2|C|706
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain a
- KOW domain-containing protein
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