HL_7QIZ_025

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUUGUUG

Length

8 nucleotides

Bulged bases

7QIZ|1|2|U|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_025 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.0997

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7QIZ|1|2|C|1088
7QIZ|1|2|U|1089
7QIZ|1|2|U|1090
7QIZ|1|2|U|1091
7QIZ|1|2|G|1092
7QIZ|1|2|U|1093
7QIZ|1|2|U|1094
7QIZ|1|2|G|1095

Current chains

Chain 2

25S rRNA

Nearby chains

Chain G

Ribosomal_L18_c domain-containing protein

Chain V

60S ribosomal protein eL21

Chain d

60S ribosomal protein L29