HL_7QIZ_047

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

7QIZ|1|2|C|2260, 7QIZ|1|2|A|2262

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_047 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.4451

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|G|2256
7QIZ|1|2|PSU|2257
7QIZ|1|2|A|2258
7QIZ|1|2|A2M|2259
7QIZ|1|2|C|2260
7QIZ|1|2|PSU|2261
7QIZ|1|2|A|2262
7QIZ|1|2|PSU|2263
7QIZ|1|2|G|2264
7QIZ|1|2|A|2265
7QIZ|1|2|C|2266

Current chains

Chain 2

25S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA