HL_7QIZ_048

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(OMC)UAAUUAG

Length

9 nucleotides

Bulged bases

7QIZ|1|2|U|2301

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_048 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0853

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7QIZ|1|2|U|2295
7QIZ|1|2|OMC|2296
7QIZ|1|2|U|2297
7QIZ|1|2|A|2298
7QIZ|1|2|A|2299
7QIZ|1|2|U|2300
7QIZ|1|2|U|2301
7QIZ|1|2|A|2302
7QIZ|1|2|G|2303

Current chains

Chain 2

25S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain X

60S ribosomal protein uL14