HL_7QIZ_058

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGU(PSU)CAUAG

Length

9 nucleotides

Bulged bases

7QIZ|1|2|U|2846

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_058 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.3106

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QIZ|1|2|C|2844
7QIZ|1|2|G|2845
7QIZ|1|2|U|2846
7QIZ|1|2|PSU|2847
7QIZ|1|2|C|2848
7QIZ|1|2|A|2849
7QIZ|1|2|U|2850
7QIZ|1|2|A|2851
7QIZ|1|2|G|2852

Current chains

Chain 2

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L10

Chain o

Ubiquitin