HL_7QIZ_076
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UAGAUAGC(OMG)AUGAUUCA(PSU)G
- Length
- 19 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|252
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_076 not in the Motif Atlas
- Geometric match to HL_2DER_004
- Geometric discrepancy: 0.3826
- The information below is about HL_2DER_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
7QIZ|1|S2|U|209
7QIZ|1|S2|A|210
7QIZ|1|S2|G|211
7QIZ|1|S2|A|212
7QIZ|1|S2|U|213
7QIZ|1|S2|A|214
7QIZ|1|S2|G|244
7QIZ|1|S2|C|245
7QIZ|1|S2|OMG|246
7QIZ|1|S2|A|247
7QIZ|1|S2|U|248
7QIZ|1|S2|G|249
7QIZ|1|S2|A|250
7QIZ|1|S2|U|251
7QIZ|1|S2|U|252
7QIZ|1|S2|C|253
7QIZ|1|S2|A|254
7QIZ|1|S2|PSU|255
7QIZ|1|S2|G|256
Current chains
- Chain S2
- 18S
Nearby chains
- Chain FA
- 40S ribosomal protein S6
- Chain w
- 40S ribosomal protein S4
- Chain y
- 40S ribosomal protein S8
- Chain z
- Ribosomal_S17_N domain-containing protein
Coloring options: