HL_7QIZ_078

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7QIZ|1|S2|G|341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_078 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.0786

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7QIZ|1|S2|G|334
7QIZ|1|S2|A|335
7QIZ|1|S2|U|336
7QIZ|1|S2|A|337
7QIZ|1|S2|G|338
7QIZ|1|S2|U|339
7QIZ|1|S2|G|340
7QIZ|1|S2|G|341
7QIZ|1|S2|C|342

Current chains

Chain S2

18S

Nearby chains

Chain y

40S ribosomal protein S8

Chain z

Ribosomal_S17_N domain-containing protein