HL_7QIZ_091
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GA(PSU)CAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|1007
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_091 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.2414
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
7QIZ|1|S2|G|1000
7QIZ|1|S2|A|1001
7QIZ|1|S2|PSU|1002
7QIZ|1|S2|C|1003
7QIZ|1|S2|A|1004
7QIZ|1|S2|G|1005
7QIZ|1|S2|A|1006
7QIZ|1|S2|U|1007
7QIZ|1|S2|A|1008
7QIZ|1|S2|C|1009
7QIZ|1|S2|C|1010
Current chains
- Chain S2
- 18S
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- 40S ribosomal protein S26
- Chain IA
- Ribosomal protein S14
- Chain aA
- tRNA_1
- Chain bA
- mRNA
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