HL_7QIZ_107

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(A2M)CGUGCAAA(PSU)

Length

10 nucleotides

Bulged bases

7QIZ|1|2|U|889, 7QIZ|1|2|A|893, 7QIZ|1|2|A|894

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_107 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.2165

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7QIZ|1|2|A2M|886
7QIZ|1|2|C|887
7QIZ|1|2|G|888
7QIZ|1|2|U|889
7QIZ|1|2|G|890
7QIZ|1|2|C|891
7QIZ|1|2|A|892
7QIZ|1|2|A|893
7QIZ|1|2|A|894
7QIZ|1|2|PSU|895

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic

Chain l

Ribosomal protein L37