HL_7QIZ_109
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CG(OMC)AUCA(OMG)
- Length
- 8 nucleotides
- Bulged bases
- 7QIZ|1|2|OMC|1852, 7QIZ|1|2|U|1854, 7QIZ|1|2|A|1856
- QA status
- Modified nucleotides: OMC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_109 not in the Motif Atlas
- Geometric match to HL_8C3A_041
- Geometric discrepancy: 0.0761
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
7QIZ|1|2|C|1850
7QIZ|1|2|G|1851
7QIZ|1|2|OMC|1852
7QIZ|1|2|A|1853
7QIZ|1|2|U|1854
7QIZ|1|2|C|1855
7QIZ|1|2|A|1856
7QIZ|1|2|OMG|1857
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain R
- 50S ribosomal protein L22, chloroplastic
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
Coloring options: