HL_7QIZ_110

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(PSU)UUAAUUAAAA

Length

11 nucleotides

Bulged bases

7QIZ|1|2|A|2142, 7QIZ|1|2|A|2143, 7QIZ|1|2|U|2144, 7QIZ|1|2|A|2148

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_110 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.2245

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7QIZ|1|2|PSU|2139
7QIZ|1|2|U|2140
7QIZ|1|2|U|2141
7QIZ|1|2|A|2142
7QIZ|1|2|A|2143
7QIZ|1|2|U|2144
7QIZ|1|2|U|2145
7QIZ|1|2|A|2146
7QIZ|1|2|A|2147
7QIZ|1|2|A|2148
7QIZ|1|2|A|2149

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain l

Ribosomal protein L37