HL_7QIZ_117

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGGUGAAAU(PSU)

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_117 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.2585

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7QIZ|1|S2|A|903
7QIZ|1|S2|G|904
7QIZ|1|S2|G|905
7QIZ|1|S2|U|906
7QIZ|1|S2|G|907
7QIZ|1|S2|A|908
7QIZ|1|S2|A|909
7QIZ|1|S2|A|910
7QIZ|1|S2|U|911
7QIZ|1|S2|PSU|912

Current chains

Chain S2

18S

Nearby chains

Chain IA

Ribosomal protein S14