HL_7QP6_022

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7QP6|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP6_022 not in the Motif Atlas

Geometric match to HL_5J7L_017

Geometric discrepancy: 0.1189

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7QP6|1|A|G|1054
7QP6|1|A|A|1055
7QP6|1|A|U|1056
7QP6|1|A|C|1057
7QP6|1|A|A|1058
7QP6|1|A|G|1059
7QP6|1|A|A|1060
7QP6|1|A|U|1061
7QP6|1|A|A|1062
7QP6|1|A|C|1063
7QP6|1|A|C|1064

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain P

40S ribosomal protein S14

Chain p

Eukaryotic translation initiation factor 1