HL_7QP6_027

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7QP6|1|A|U|1300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP6_027 not in the Motif Atlas

Geometric match to HL_4V88_213

Geometric discrepancy: 0.2847

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7QP6|1|A|A|1295
7QP6|1|A|U|1296
7QP6|1|A|U|1297
7QP6|1|A|G|1298
7QP6|1|A|A|1299
7QP6|1|A|U|1300
7QP6|1|A|A|1301
7QP6|1|A|G|1302
7QP6|1|A|C|1303
7QP6|1|A|U|1304

Current chains

Chain A

18S rRNA

Nearby chains

Chain b

40S ribosomal protein S15

Chain i

40S ribosomal protein S29

Chain k

Ubiquitin-40S ribosomal protein S27a