HL_7QVP_059

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

7QVP|1|L5|U|2707, 7QVP|1|L5|C|2709, 7QVP|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_059 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3966

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7QVP|1|L5|C|2704
7QVP|1|L5|G|2705
7QVP|1|L5|G|2706
7QVP|1|L5|U|2707
7QVP|1|L5|U|2708
7QVP|1|L5|C|2709
7QVP|1|L5|C|2710
7QVP|1|L5|G|2711
7QVP|1|L5|G|2712

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain LX

60S ribosomal protein L23a