HL_7QVP_066

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

7QVP|1|L5|A|3642, 7QVP|1|L5|A|3643, 7QVP|1|L5|U|3644, 7QVP|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_066 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1582

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7QVP|1|L5|U|3639
7QVP|1|L5|U|3640
7QVP|1|L5|U|3641
7QVP|1|L5|A|3642
7QVP|1|L5|A|3643
7QVP|1|L5|U|3644
7QVP|1|L5|U|3645
7QVP|1|L5|A|3646
7QVP|1|L5|A|3647
7QVP|1|L5|A|3648
7QVP|1|L5|A|3649

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

Ribosomal protein L37