HL_7QVP_116

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7QVP|1|L6|U|1596, 7QVP|1|L6|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_116 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0717

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7QVP|1|L6|A|1593
7QVP|1|L6|C|1594
7QVP|1|L6|G|1595
7QVP|1|L6|U|1596
7QVP|1|L6|G|1597
7QVP|1|L6|C|1598
7QVP|1|L6|A|1599
7QVP|1|L6|A|1600
7QVP|1|L6|A|1601
7QVP|1|L6|U|1602

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain MP

60S ribosomal protein L17

Chain Mj

Ribosomal protein L37