HL_7QVP_117

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7QVP|1|L6|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_117 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.127

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QVP|1|L6|G|1627
7QVP|1|L6|C|1628
7QVP|1|L6|G|1629
7QVP|1|L6|A|1630
7QVP|1|L6|A|1631
7QVP|1|L6|A|1632
7QVP|1|L6|G|1633
7QVP|1|L6|A|1634
7QVP|1|L6|C|1635

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MA

60S ribosomal protein L8

Chain MN

60S ribosomal protein L15

Chain Mj

Ribosomal protein L37