HL_7QVP_146
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 7QVP|1|L6|U|3802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_146 not in the Motif Atlas
- Homologous match to HL_8C3A_050
- Geometric discrepancy: 0.1181
- The information below is about HL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7QVP|1|L6|U|3796
7QVP|1|L6|C|3797
7QVP|1|L6|U|3798
7QVP|1|L6|A|3799
7QVP|1|L6|A|3800
7QVP|1|L6|U|3801
7QVP|1|L6|U|3802
7QVP|1|L6|A|3803
7QVP|1|L6|G|3804
Current chains
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain D5
- Transfer RNA; tRNA
- Chain MV
- 60S ribosomal protein L23
- Chain S3
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: