HL_7QVP_152

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

7QVP|1|L6|A|4214, 7QVP|1|L6|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_152 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1493

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7QVP|1|L6|U|4210
7QVP|1|L6|C|4211
7QVP|1|L6|A|4212
7QVP|1|L6|A|4213
7QVP|1|L6|A|4214
7QVP|1|L6|C|4215
7QVP|1|L6|G|4216
7QVP|1|L6|G|4217
7QVP|1|L6|U|4218
7QVP|1|L6|A|4219
7QVP|1|L6|A|4220
7QVP|1|L6|C|4221
7QVP|1|L6|G|4222

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MI

60S ribosomal protein L10-like

Chain MT

60S ribosomal protein L21

Chain Mb

60S ribosomal protein L29