HL_7QVP_158

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_158 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1968

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QVP|1|L6|C|4417
7QVP|1|L6|G|4418
7QVP|1|L6|U|4419
7QVP|1|L6|U|4420
7QVP|1|L6|C|4421
7QVP|1|L6|A|4422
7QVP|1|L6|U|4423
7QVP|1|L6|A|4424
7QVP|1|L6|G|4425

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MI

60S ribosomal protein L10-like

Chain Mm

Ubiquitin-60S ribosomal protein L40